If you are asking if yEd offers a layout algorithm for automatically arranging your graph that respects a time axis, then the answer is unfortunately "no, it does not."
It is, of course, possible to manually arrange your graph in the desired way in yEd. Moreover, using features like hierarchical layout's "Use Drawing as Sketch", a semi-automatic approach might be possible (i.e. roughly place your elements and have the hierarchical layout do the exact placement).